Elena Lilkova

Conference Reportsof Elena Lilkova

2021

Petkov P, Lilkova E, Litov L, Ilieva N, Charge dependence of the membrane destruction modes of linear antimicrobial peptides: a case study, 16th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'21, 21--23 December 2021, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Lilkova E, Petkov P, Litov L, Ilieva N, Computational modelling of the interactions of hIFNg and heparin-derived oligosaccharides, 16th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'21, 21--23 December 2021, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Lilkova E, Petkov P, Marinova R, Litov L, Ilieva N, Observation of charge-dependent membrane-destruction modes in AMP-membrane interactions, Workshop on Numerical and Symbolic Scientific Computing, NSSC21, 20--23 September 2021, Sofia, Bulgaria, Workshop Programme.
Ilieva N, Petkov P, Rangelov M, Lilkova E, Todorova N, Litov L, Cytokines activity impairment through heparin – molecular mechanism and therapeutic potential, Workshop on Numerical and Symbolic Scientific Computing, NSSC21, 20--23 September 2021, Sofia, Bulgaria, Workshop Programme.
Ilieva N, Petkov P, Rangelov M, Lilkova E, Todorova N, Litov L, In silico study of the antiinflammatory action of heparin within the Covid-19 context, Workshop on Numerical and Symbolic Scientific Computing, NSSC21, 20--23 September 2021, Sofia, Bulgaria, Workshop Programme.
Ilieva N, Petkov P, Lilkova E, Litov L, Enhanced sampling molecular modeling of peptide-membrane interactions: a case study, International Workshop „Mathematics of Life“, MoL2021, 13--18 September 2021, Hissarya, Bulgaria, Book of Abstracts, Workshop Programme.
Ilieva N, Petkov P, Rangelov M, Lilkova E, Todorova N, Litov L, In silico study of the molecular mechanism of LMWH antiinflammatory action within the Covid-19 context, International Workshop „Mathematics of Life“, MoL2021, 13--18 September 2021, Hissarya, Bulgaria, Book of Abstracts, Workshop Programme.
Petkov P, Rangelov M, Ilieva N, Todorova N, Lilkova E, Litov L, LMWH as a prospective IL-6 blocker: a computational study, 13th Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'21, 24--29 June 2021, Albena, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, Litov L, Metadynamics approach to modelling peptide-membrane interactions – a proof-of-concept study, 13th Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'21, 24--29 June 2021, Albena, Bulgaria, Book of Abstracts, Conference Programme.
Petkov P, Rangelov M., Ilieva N, Lilkova E, Todorova N, Litov L, Computational Study of IL-6 Inhibition by Low-Molecular-Weight Heparin, 13th International Conference on "Large-Scale Scientific Computations", LSSC'21, 8--11 June 2021, Sozopol, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, and Litov L, Computational Study of Helix Aspersa Mucus Peptides in complex with a Model Bacterial Membrane, 13th International Conference on "Large-Scale Scientific Computations", LSSC'21, 8--11 June 2021, Sozopol, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, and Litov L, Probing the membrane-destruction potential of the newly identified peptide aspersin DK10 (DLTLNGLSPK), National Scientific Conference "Innovative low-toxic bioactive systems for precision medicine", 11--14 May 2021, Panagyurishte, Bulgaria.

2020

Lilkova E, Ilieva N, Petkov P, and Litov L, Computational study of the aggregation behaviour of antimicrobial peptides, 15th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'20, 15--17 December 2020, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Rangelov M, Todorova N, Lilkova E, and Litov L, Suggesting a new approach for management of the cytokine storm using computer modeling and simulations, 15th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'20, 15--17 December 2020, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Lazarovа T, Petkov P, Lilkova E, Litov L, Ilieva N, In Silico Study of Mono- and Multicomponent Solutions of Antimicrobial Peptides, International Symposium on Bioinformatics and Biomedicine, BioInfoMed'2020, 8--10 October 2020, Burgas, Bulgaria, Book of Abstracts, Conference Programme.
Petkov P, Lazarovа T, Lilkova E, Ilieva N, Litov L, Molecular Modelling of Antimicrobial-peptide Mixtures from the Mucus of Garden Snail, Scinetific Conference "Ecological health products, 5--8 October 2020, Velingrad, Bulgaria.
Lazarovа T, Petkov P, Lilkova E, Litov L, Ilieva N, Self-Association of Antimicrobial Peptides in Solution: Formation Patterns, 12th Online Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'20, 24--29 June 2020, Albena, Bulgaria, Book of Abstracts, Conference Programme.
Lilkova E, Ilieva N, Petkov P, Rangelov, M, Litov L, In Silico Indications for Human Interferon Gamma Inhibition by Heparin, 12th Online Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'20, 24--29 June 2020, Albena, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Rangelov M, Todorova N, Lilkova E, and Litov L, Gaining control over cytokine storm in COVID-19: in silico perspective, 12th Online Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'20, 24--29 June 2020, Albena, Bulgaria, Book of Abstracts, Conference Programme.

2019

Lazarovа T, Petkov P, Ilieva N, Lilkova E, Litov L, In silico study of the self-organisation process in mono-component solutions of antimicrobial peptides, (poster presentation), 14th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'19, 17--19 December 2019, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Lilkova, E, Ilieva, N, Petkov, P, Litov, L, Modelling radiation damage in materials, Workshop on Numerical and Symbolic Scientific Computing, NSSC2019, 8--12 September 2019, Varna, Bulgaria, Workshop Programme.
Ilieva N, Pavlov B, Petkov P, Lilkova E, Litov L, GEANT4 on Large Intel Xeon Phi Clusters: Implementation and Performance, Workshop on Numerical and Symbolic Scientific Computing, NSSC2019, 8--12 September 2019, Varna, Bulgaria, Workshop Programme.
Lilkova, E, Ilieva, N, Petkov, P, Litov, L, Self-association evidence for partially intrinsically disordered antimicrobial peptides via long-scale MD simulations: a case study, HIGH PERFORMANCE COMPUTING - BULGARIA 2019, HPC 2019, 2--6 September 2019, Borovets, Bulgaria, Conference Programme.
Lilkova, E, Ilieva, N, Petkov, P, Lazarova, T, Litov, L, Computational Study of Novel Natural Bioative Peptides in Solution, Eleventh Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'19, 20--25 June 2019, Albena, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, Lazarova T, Dolashka P, Litov L, Self-organisation in polypeptide substances: towards understanding biological activity of antimicrobial peptides, International Conference on Mathematical Methods and Models in Biosciences, Biomath 2019, 16--22 June 2019, Będlewo, Poland, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, Lazarova T, Dolashki A, Velkova L, Dolashka P, Litov L, In Silico Study on the Structure of Novel Natural Bioactive Peptides, 12th International Conference on Large-Scale Scientific Computations, LSSC'19, 10--14 June 2019, Sozopol, Conference Programme.
Lilkova, E, Petkov, P, Ilieva, N, Litov, L, HPC Mutation Free Energy Calculations in Human Interferon–Gamma Analogues, (poster presentation), 12th International Conference on Large-Scale Scientific Computations, LSSC'19, 10--14 June 2019, Sozopol, Conference Programme.
Lilkova E, Mutation Free Energies of Human Interferon-Gamma Analogues, (poster presentation), Alchemical Free Energy Workshop 2019, 27--28 May 2019, Göttingen, Germany, Posters
Petkov, P, Lilkova, E, Ilieva, N, Litov, L, Modeling the Solution Behaviour of Novel Natural Bioactive Peptides, (poster presentation), Biomolecules and Nanostructures 7, 15--19 May 2019, Pomlewo, Poland.
Petkov, P, Lilkova, E, Ilieva, N, Litov, L, Modeling the Solution Behaviour of Novel Natural Bioactive Peptides, (poster presentation), Challenges in Large Scale Biomolecular Simulations 2019: Bridging Theory and Experiments, 13--17 May 2019, Cargèse, France, Book of Abstracts

2018

Lilkova E, Ilieva N, Petkov P, Krachmarova E, Nacheva G and Litov L, Molecular dynamics simulations of His_6--FLAG--hIFNγ fusion glycoproteins, (poster presentation), 13th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'18, 18--20 December 2018, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Lilkova E, Petkov P, Litov L, Tracing point-mutation implications in human interferon-gamma variants, (poster presentation), 13th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'18, 18--20 December 2018, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Lazarova T, Petkov P, Ilieva N, Lilkova E, Litov L, Dolashka P, Molecular Dynamics Study of Snail Mucus Peptides Self-Assembly, International Conference on Mathematical Methods and Models in Biosciences, Biomath 2018, 24--29 June 2018, Sofia, Bulgaria, Conference Programme.
Lilkova E, Ilieva N, Petkov P, and Litov L, Molecular modelling of the effects of glycosilation on the structure and dynamics of native and N-terminally tagged hIFNg,(poster presentation), Modeling and Design of Molecular Materials 2018, MDMM 2018, 24--28 June 2018, Polanica Zdrój, Poland.
Lilkova E, Ilieva N, Petkov P, Litov L, Influence of glycosilation on human interferon gamma – a molecular dynamics study, Tenth Jubilee Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'18, 20--25 June 2018, Albena, Bulgaria, 2018, Book of Abstracts, Conference Programme.
Ilieva N, Marinova R, Petkov P, Lilkova E, Litov L, Coarse graining in structure studies: cluster formation from peptides in water solution, Tenth Jubilee Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'18, 20--25 June 2018, Albena, Bulgaria, 2018, Book of Abstracts, Conference Programme.
Ilieva N, Lilkova E, Petkov P, Litov L, Footprint of point mutations in domain decomposition of large proteins, Tenth Jubilee Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'18, 20--25 June 2018, Albena, Bulgaria, 2018, Book of Abstracts, Conference Programme.
Ilieva N, Lilkova E, Clustering in Structure Studies of Large Proteins, Third International Conference on Numerical Methods for Scientific Computations and Advanced Applications, (NMSCAA'18), 28--31 May 2018, Hissarya, Bulgaria, Conference Programme.
Lilkova E, Ilieva N, Petkov P, and Litov L, Study of Human Interferon-Gamma Glycosilation by Molecular Dynamics Simulations, Third International Conference on Numerical Methods for Scientific Computations and Advanced Applications, (NMSCAA'18), 28--31 May 2018, Hissarya, Bulgaria, Conference Programme.
Ilieva N, Lilkova E, Clustering in Structure Studies of Large Proteins, 47 th Spring Conference of the Union of Bulgarian Mathematicians, 2--6 April 2018, Borovetz, Bulgaria, Conference Programme.
Lilkova E, Ilieva N, Petkov P, and Litov L, Molecular dynamics study of the effects of glycosilation on human interferon gamma dynamics, 47 th Spring Conference of the Union of Bulgarian Mathematicians, 2--6 April 2018, Borovetz, Bulgaria, Conference Programme.

2017

Lilkova E, Ilieva N, Petkov P, and Litov L, Influence of glycosilation on human interferon gamma dynamics – setting up the stage, (poster presentation), 12th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'17, 20--22 December 2017, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Marinova R, Petkov P, Ilieva N, Lilkova E, Litov L , Cluster formation from disordered peptides in water solution: a coarse-grain molecular dynamics approach, (poster presentation), 12th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'17, 20--22 December 2017, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Petkov P, Lilkova E, Marinova R, Niemi A, He J, Litov L , Biomolecular studies in coarse-grain approaches: the good, the bad, and the beautiful, (poster presentation), 12th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'17, 20--22 December 2017, Sofia, Bulgaria, Book of Abstracts, Conference Programme.
Ilieva N, Lilkova E, Marinova R, Litov L, Petkov P , Molecular Dynamics Study of Indolicidin Behaviour in Solution, Workshop “Two Years Avitohol: Advanced HPC applications”, 29--31 October 2017, Panagyurishte, Bulgaria
Ilieva N, Lilkova E, Litov L, Pavlov B, Petkov P , On the Use of Large Intel Xeon Phi Clusters for GEANT4-based Simulations, Workshop “Two Years Avitohol: Advanced HPC applications”, 29--31 October 2017, Panagyurishte, Bulgaria
Ilieva N, Petkov P, Lilkova E, Niemi A, He J, Litov L, Biomolecule Modelling: Conformation Studies in Coarse-Grain Approaches, Ninth Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'17, 21--26 June 2017, Albena, Bulgaria, 2017, Book of Abstracts, Conference Programme.
Ilieva N, Lilkova E, Petkov P, Litov L, Studying The Asymmetry in the hIFNγ Homodimer Using Moleular Dynamis Simulations, Ninth Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'17, 21--26 June 2017, Albena, Bulgaria, 2017, Book of Abstracts, Conference Programme.
Lilkova E, Ilieva N, Petkov P, and Litov L Asymetric Behavior of the hIFNγ Homodimer in Molecular Dynamics Simulations, 11th International Conference on "Large-Scale Scientific Computations", LSSC'17, June 5--9 2017, Sozopol, Bulgaria, Conference Programme.
Lilkova E, Ilieva N, Petkov P, and Litov L Using Highly Efficient Molecular Dynamics Simulations to Study the Effect of Tagging on Signaling Proteins, Course and Workshop on “Parallel Numerical Linear Algebra with Applications”, March 28--31 2017, Sofia, Bulgaria, Conference Programme.
Ilieva N, Lilkova E, Petkov P, and Litov L Scales Compatibility in Biomolecular Modeling, Course and Workshop on “Parallel Numerical Linear Algebra with Applications”, March 28--31 2017, Sofia, Bulgaria, Conference Programme.

2016

Ilieva N, Lilkova E, Petkov P, and Litov L, Identification of structural units in large proteins for guided metadynamics investigations, 11th Annual Meeting of the Bulgarian Section of SIAM, BGSIAM'16, 20-22 December 2016, Sofia, Bulgaria, Conference Programme.
Ilieva N, Lilkova E, Pekov P, and Litov L, Collective variables choice for metadynamics simulations of proteins, Third National Congress in Physics, 29 September--02 October 2016, Sofia, Bulgaria, Congress Programme.
Ilieva N, Lilkova E, Petkov P, Litov L, Semi-rigidity vs. flexibility in collective variables preselection for metadynamics studies of large proteins, Eighth Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'16, 22--27 June 2016, Albena, Bulgaria, 2016, Book of Abstracts, Conference Programme.
Marinova R, Petkov P, Kochev V, Ilieva N, Lilkova E, Litov L, Free-energy Landscape of Magainin Monomer Variants in Water Solution: a Well-tempered Metadynamics Study, International Conference on Mathematical Methods and Models in Biosciences Biomath 2016, 19--25 June 2016, Blagoevgrad, Bulgaria, Conference Programme.
Ilieva N, Lilkova E, Petkov P, Litov L, Metadynamis of Large Proteins with Colletive Variables Preseletion by a Spatiotemporal Multistage Consensus Clustering, International Conference on "Numerical Methods for Scientific Computations and Advanced Applications" NMSCAA'16, 29 May--02 June 2016, Hissarya, Bulgaria, Conference Programme.

2015

Lilkova E, Petkov P, Ilieva N, and Litov L, Influence of Heparin-like Oligosaccharides on hIFN-γ--hIFNγR Binding, Anniversary conference of the Roumen Tsanev Institute of Molecular Biology 2015, 05--06 October 2015, Sofia Bulgaria, Conference Programme.
Lilkova E, Petkov P, Ilieva N, Litov L, Molecular Modelling of the interactions of Heparin-Derived Oligosaccharides, hIFNI-g and its extracellular receptors, Seventh Conference of the Euro-American Consortium for Promoting the Application of Mathematics in Technical and Natural Sciences, AMiTaNS'15, 28 June--03 July 2015, Albena, Bulgaria, Conference Programme.
Lilkova E, Petkov P, Ilieva N, Litov L, Molecular Modelling of the Complex hIFNI-gamma--hIFNgammaR--Heparin-Derived Oligosaccharides, International Conference on Mathematical Methods and Models in Biosciences, BIOMATH 2015, 14--19 June 2015, Blagoevgrad, Bulgaria, Conference Programme.

2014

Lilkova E, Petkov P, Grancharov D, Petkov P S, Ilieva N, Litov L, Estimating protein-protein binding freeenergies by the unit interval approach, (poster presentation), Modeling and Design of Molecular Materials MDMM 2014, 29 June -- 3 July 2015, Kudowa-Zdrój, Poland, Conference Programme.

2013

Lilkova E, Petkov P, Ilieva N, Grancharov D, Litov L, Petkov P, Molecular Dynamics Simulations of Human Interferon Gamma, Second National Congress in Physics, 25--29 September 2013, Sofia, Bulgaria, Congress Programme.
Petkov P, Lilkova E, Grancharov D, Petkov PS, Ilieva N, Litov L, Calculating Binding Free Energies of Variants of hIFN-g and their Extracellular Receptor, International Conference on Mathematical Methods and Models in Biosciences, BIOMATH 2013, 16--21 June 2013, Sofia, Bulgaria, Conference Programme.

2012

Petkov P, Lilkova E, Ilieva N, and Litov L, Modeling the Structure of Human Interferon Gamma C-Termini, International Conference on Bioinformatics and Computational Biology, BIOCOMP 2012, 20--21 September 2012, Varna, Bulgaria, Book of Abstracts.

2011

Nacheva G, and Lilkova E, Stability of mutant human interferon-gamma derivatives – a complex approach study, Anniversary Molecular Biology Conference “50 years Institute of Molecular Biology Roumen Tsanev”, 6--7 October 2011, Sofia, Bulgaria, Book of Abstracts.
Petkov P, Lilkova E, Petkov P, Ilieva N, and Litov L, Application of metadynamics for investigation of human interferon gamma mutated forms, Second Regional Conference "Supercomputing Applications in Science and Industry", 20--21 September 2011, Sunny Beach, Bulgaria.
Petkov P, Lilkova E, Petkov P, Ilieva N, and Litov L, Application of metadynamics for investigation of human interferon gamma mutated forms, International Scientific Conference Computer Science’2011, 01--03 September 2011, Ohrid, Macedonia.
Lilkova E, Petkov P, Petkov P, Markov S, Ilieva N, and Litov L, Metadynamics study of mutated human interferon gamma forms, International Conference on Mathematical Methods and Models in Biosciences, BIOMATH 2011, 15--18 June 2011, Sofia, Bulgaria, Conference Programme.